A site system is a unique site system role in Configuration Manager. This role cannot be manually added nor can it be manually removed. This role is managed by the site server itself and will exist on any server that is serving as a site system in the hierarchy. The site server itself will always be a site system as will any remote servers that are deployed to host various roles to provide services needed by the site.
The overall health of the site system server can be reviewed in the Monitoring node of the console. The specific nodes to review as well as the specific log files will be dictated by the specific functions being performed by the site system server.
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